SubtiBank SubtiBank
ycsA [2018-02-12T16:13:00.000Z]
You are currently viewing an outdated version of SubtiWiki. Please use the newest version!

ycsA [2018-02-12T16:13:00.000Z]

putative tartrate dehydrogenase
locus
BSU04000
pI
5.11
mw
38.67 kDa
protein length
354 aa Sequence Blast
gene length
1062 bp Sequence Blast
function
unknown
product
putative tartrate dehydrogenase
essential
no
ec
1.1.1.93
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.6|Poorly characterized/ putative enzymes]

    • Gene

    Coordinates
    452,830 → 453,894

    The protein

    Catalyzed reaction/ biological activity

  • Tartrate + NAD+ = oxaloglycolate + NADH (according to Swiss-Prot)

    • Protein family

  • isocitrate and isopropylmalate dehydrogenases family (according to Swiss-Prot)

    • Paralogous protein(s)

  • [protein|105E3452D7F142A7D7616E35AF3FB753C9B63E38|LeuB] (36%), [protein|CB7D0E32C044D541CD966DC1F9DA489D518A7703|Icd] (28,3%)

    • Structure

  • [PDB|3FMX] (from ''Pseudomonas Putida '', 51% identity)

    • Expression and Regulation

    Operons

    genes
    [gene|E9D1B04FCB24402B56DC6A6F7AD696209E4BD0FA|ycsA]
    description
    [pubmed|22383849]
    view in new tab

    Biological materials

    Mutant

  • MGNA-C020 (ycsA::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2018 NBRP B. subtilis, Japan]
  • BKE04000 (Δ[gene|E9D1B04FCB24402B56DC6A6F7AD696209E4BD0FA|ycsA]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE04000 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTCTCCTTCCCCTGTTAT, downstream forward: _UP4_TGATGAATCAGGCCGGTGGC
  • BKK04000 (Δ[gene|E9D1B04FCB24402B56DC6A6F7AD696209E4BD0FA|ycsA]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK04000 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTCTCCTTCCCCTGTTAT, downstream forward: _UP4_TGATGAATCAGGCCGGTGGC